Galaxy Freiburg
The homepage of the Freiburg Galaxy community
Galaxy is an open-source platform for FAIR data analysis that enables users to:
- use tools from various domains (that can be plugged into workflows) through its graphical web interface.
- run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
- manage data by sharing and publishing results, workflows, and visualizations.
- ensure reproducibility by capturing the necessary information to repeat and understand data analyses.
The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.
News
UseGalaxy.eu Use Case: Profiling of Tregs in Coronary Artery Disease using RNAseq
A report out of Galaxy Europe's user space, by Sheu-Tijani Olawale Abogunloko
Check out the newest features and updates on Galaxy!
UseGalaxy.eu Use Case: cardiac regeneration in neonatal mice
A report out of Galaxy Europe's user space, by Mona Malek Mohammadi
Galaxy in Research: Exploring the Hidden World of Antarctic Toxins with Galaxy
Discover how Galaxy is helping to unravel the hidden world of peptide toxins in an Antarctic marine invertebrate.
UseGalaxy.eu Use Case: RNA-directed DNA methylation (RdDM) in barley
A report out of Galaxy Europe's user space, by Fabio Miloro
Events
May 14 - May 23RDA 22nd Plenary Meeting – Fully Virtual
The Research Data Alliance (RDA) Plenary Meeting will focus on collaboration and engagement with their global community through the sharing of local experiences, best practices and recommendations. The European Galaxy project is invited to talk about Research Data Management in Galaxy and to give an overview of Galaxy features that serve different parts of the data life cycle.
Jun 10 - Jun 11ELIXIR All Hands 2024
The 10th ELIXIR All Hands meeting brings together members of the ELIXIR community from across the ELIXIR Nodes, and collaborators from partner organisations. Galaxy will be presented by different nodes.
Jun 17 - Jun 21Workshop on high-throughput sequencing data analysis with Galaxy
This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.
Jun 24 - Jun 292024 Galaxy Community Conference (GCC2024)
The annual gathering of the Galaxy Community with opportunities to hear latest developments, get training, and meet everyone involved.
Our services
The Freiburg Galaxy Team is offering several services to enable reproducible and accessible research for everyone:
Training
We regularly provide workshops.
But we cannot always meet capacity, so we've put all of our training materials online. This has become a community project with people from all over the world contributing training materials.
Topics include: variant analysis, transcriptomics, metagenomics, epigenetics, and many more!
Acknowledgements
We are aiming to maintain high competency and provide high-quality data analysis services to all our Galaxy users.
Therefore, we request that you acknowledge this service by including the members of the Freiburg Galaxy Team as co-authors if they have made a significant intellectual and/or organizational contribution to the work described (conceptualization, design, data analysis, data interpretation and/or input into drafting, revising or writing any portion of the manuscript).
Individuals who have contributed to the project, but whose contributions do not rise to the level justifying authorship, can be recognized in the acknowledgements section of the manuscript as follows:
The authors acknowledge the support of the Freiburg Galaxy Team: Person X and Prof. Rolf Backofen, Bioinformatics, University of Freiburg, Germany funded by Collaborative Research Centre 992 Medical Epigenetics (DFG grant SFB 992/1 2012) and the German Federal Ministry of Education and Research (BMBF grant 031 A538A de.NBI-RBC).
Additional funding of projects and/or provision of material expenses are welcome as well, to help support our growing Galaxy community in Freiburg.